PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038793m
Common NameCISIN_1g038793mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 252aa    MW: 28523.3 Da    PI: 5.0728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038793mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.4e-16160247183
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                        f k+l  sd +k++ +v+  k ae+        ++kk+ +  ++ +d +g  W++++ +++ks+r++lt GWk Fv++++L  gD+v+F 
  orange1.1g038793m 160 FYKKLRASDQSKKK-IVIRAKDAENVfpflahlDYKKQINYSVIAKDVHGVAWKFNF-VDGKSRRHYLTVGWKYFVRQKNLVPGDTVIFI 247
                        77999899999887.********777*******99999*******************.8*****************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-20152248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-16155248IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-14158246No hitNo description
PfamPF023625.8E-13160247IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532201251IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
ETIDAPSETE TDDLNSTEIS DEDDCEGEIE TDDLIFTEIS DKDDDYNLLL WQAFAGPPPS  60
LPKKGDLVVY FPQGHLEYSA PASVSKAPPT FDLKPEIICR VADVRYLVSK KTDKVYTKMT  120
LLPLPEMVGE NFKGKELQDL VVDNKRDGEG STANSTPPLF YKKLRASDQS KKKIVIRAKD  180
AENVFPFLAH LDYKKQINYS VIAKDVHGVA WKFNFVDGKS RRHYLTVGWK YFVRQKNLVP  240
GDTVIFIRYA Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-275024823212Auxin response factor 1
4ldw_A1e-275024823212Auxin response factor 1
4ldw_B1e-275024823212Auxin response factor 1
4ldx_A1e-275024823212Auxin response factor 1
4ldx_B1e-275024823212Auxin response factor 1
4ldy_A1e-275024823212Auxin response factor 1
4ldy_B1e-275024823212Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.2890.0fruit
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438940.11e-178hypothetical protein CICLE_v10030751mg
RefseqXP_006482934.11e-178PREDICTED: auxin response factor 3-like isoform X1
RefseqXP_006482935.11e-178PREDICTED: auxin response factor 2-like isoform X2
SwissprotQ9ZTX92e-53ARFD_ARATH; Auxin response factor 4
TrEMBLA0A067DIG40.0A0A067DIG4_CITSI; Uncharacterized protein (Fragment)
STRINGPOPTR_0009s01700.11e-55(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.11e-54auxin response factor 4